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hidden markov model files  (InterPro Inc)

 
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    InterPro Inc hidden markov model files
    Hidden Markov Model Files, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/hidden markov model files/product/InterPro Inc
    Average 90 stars, based on 1 article reviews
    hidden markov model files - by Bioz Stars, 2026-06
    90/100 stars

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    Phylogenetic analysis was performed on 163 predicted <t>PP2</t> protein sequences from eight plant species. Each subfamily represented a distinct color. The prefixes Phe, Ola, Rgu, Rdi, Bam, Gan, At, and Osa were used to identify PP2 proteins from P. edulis , O. latifolia , R. guianensis , R. distichophylla , B. amplexicaulis , G. angustifolia , A. thaliana , and O. sativa , respectively. RAxML-NG on ACCESS (1.2.0) in CIPRES ( https://www.phylo.org/ ) was used to construct a maximum likelihood (ML) phylogenetic tree. Furthermore, TBtools v2.110 was used for visualization
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    Phylogenetic analysis was performed on 163 predicted PP2 protein sequences from eight plant species. Each subfamily represented a distinct color. The prefixes Phe, Ola, Rgu, Rdi, Bam, Gan, At, and Osa were used to identify PP2 proteins from P. edulis , O. latifolia , R. guianensis , R. distichophylla , B. amplexicaulis , G. angustifolia , A. thaliana , and O. sativa , respectively. RAxML-NG on ACCESS (1.2.0) in CIPRES ( https://www.phylo.org/ ) was used to construct a maximum likelihood (ML) phylogenetic tree. Furthermore, TBtools v2.110 was used for visualization

    Journal: BMC Genomics

    Article Title: PP2 gene family in Phyllostachys edulis : identification, characterization, and expression profiles

    doi: 10.1186/s12864-024-11007-5

    Figure Lengend Snippet: Phylogenetic analysis was performed on 163 predicted PP2 protein sequences from eight plant species. Each subfamily represented a distinct color. The prefixes Phe, Ola, Rgu, Rdi, Bam, Gan, At, and Osa were used to identify PP2 proteins from P. edulis , O. latifolia , R. guianensis , R. distichophylla , B. amplexicaulis , G. angustifolia , A. thaliana , and O. sativa , respectively. RAxML-NG on ACCESS (1.2.0) in CIPRES ( https://www.phylo.org/ ) was used to construct a maximum likelihood (ML) phylogenetic tree. Furthermore, TBtools v2.110 was used for visualization

    Article Snippet: A hidden Markov model file of PP2 (PF14299) was obtained from the InterPro website ( https://www.ebi.ac.uk/interpro/ ).

    Techniques: Construct